CRISPRone

CRISPRone report for GCA_000797285.1_AZPAE12420

♦ Seq 1: JTZU01000005.1 Pseudomonas aeruginosa strain AZPAE12420 AZPAE12420_contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 691658 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 549150-559446 bp Zoom in on locus 1 x11 x17 CRISPR array Location: 549150-549789 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 549150-549789 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09641:cas3HD Type: Type-I Location: 550561-553242 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 553245-554813 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 554810-555340 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 555350-556492 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 556494-557156 bp Gene: pfam08798:cas6e Type: other Location: 557131-557742 bp Gene: cd09719:cas1 Type: universal Location: 557769-558080 bp Gene: pfam09707:cas2 Type: universal Location: 558077-558376 bp CRISPR array Location: 558441-559446 bp Num of repeats: 17 Spacers: s11-s26 CRISPR array Location: 558441-559446 bp Num of repeats: 17 Spacers: s11-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 549150-549789 bp]: array | spacers
           [Locus range 558441-559446 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTZU01000022.1 Pseudomonas aeruginosa strain AZPAE12420 AZPAE12420_contig_22, whole genome shotgun sequence

⇒Summary: seq-len = 79921 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36174-46373 bp Zoom in on locus 1 x15 x13 CRISPR array Location: 36174-37042 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 36174-37042 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 37225-37788 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37792-38820 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38831-39814 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39801-41105 bp Gene: COG1203:cas3 Type: Type-I Location: 41163-44393 bp Gene: cd09718:cas1 Type: universal Location: 44390-45364 bp CRISPR array Location: 45625-46373 bp Num of repeats: 13 Spacers: s15-s26 CRISPR array Location: 45625-46373 bp Num of repeats: 13 Spacers: s15-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36174-37042 bp]: array | spacers
           [Locus range 45625-46373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)