CRISPRone

CRISPRone report for GCA_000797355.1_AZPAE12423

♦ Seq 1: JTZR01000001.1 Pseudomonas aeruginosa strain AZPAE12423 AZPAE12423_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 659238 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 156177-167239 bp Zoom in on locus 1 x17 x14 CRISPR array Location: 156177-157182 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 156177-157182 bp Num of repeats: 17 Spacers: s1-s16 Gene: pfam09707:cas2 Type: universal Location: 157247-157546 bp Gene: cd09719:cas1 Type: universal Location: 157657-158433 bp Gene: pfam08798:cas6e Type: other Location: 158460-158999 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 159046-159708 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 159710-160852 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 160862-161392 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 161389-162957 bp Gene: cd09641:cas3HD Type: Type-I Location: 162960-165641 bp CRISPR array Location: 166417-167239 bp Num of repeats: 14 Spacers: s17-s29 CRISPR array Location: 166417-167239 bp Num of repeats: 14 Spacers: s17-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 156177-157182 bp]: array | spacers
           [Locus range 166417-167239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JTZR01000012.1 Pseudomonas aeruginosa strain AZPAE12423 AZPAE12423_contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 505218 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 377052-377500 bp Zoom in on locus 1 x8 CRISPR array Location: 377052-377500 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 377052-377500 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 377052-377500 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)