CRISPRone

CRISPRone report for GCA_000813565.1_ASM81356v1

♦ Seq 1: JWJU01000008.1 Pseudomonas aeruginosa strain KY1 Contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 148843 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148405-148672 bp Zoom in on locus 1 x5 CRISPR array Location: 148405-148672 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 148405-148672 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 148405-148672 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JWJU01000059.1 Pseudomonas aeruginosa strain KY1 Contig_59, whole genome shotgun sequence

⇒Summary: seq-len = 47279 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37682-47107 bp Zoom in on locus 1 x4 x10 CRISPR array Location: 37682-37890 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 37682-37890 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09739:cas6f Type: other Location: 38073-38636 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38640-39668 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39679-40725 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40712-42016 bp Gene: COG1203:cas3 Type: Type-I Location: 42074-45304 bp Gene: cd09718:cas1 Type: universal Location: 45301-46275 bp CRISPR array Location: 46540-47107 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 46540-47107 bp Num of repeats: 10 Spacers: s4-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37682-37890 bp]: array | spacers
           [Locus range 46540-47107 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)