CRISPRone

CRISPRone report for GCA_000817165.1_DR1_assembly

♦ Seq 1: KN716132.1 Pseudomonas aeruginosa strain DR1 genomic scaffold scafold156, whole genome shotgun sequence

⇒Summary: seq-len = 47474 bp; # of CRISPR array = 2; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 985-12422 bp Zoom in on locus 1 x25 x16 CRISPR array Location: 985-2454 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 985-2454 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 2714-3688 bp Gene: COG1203:cas3 Type: Type-I Location: 3685-6915 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7326-8627 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 10011-10664 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 10728-11309 bp CRISPR array Location: 11494-12422 bp Num of repeats: 16 Spacers: s25-s39 CRISPR array Location: 11494-12422 bp Num of repeats: 16 Spacers: s25-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 985-2454 bp]: array | spacers
           [Locus range 11494-12422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: KN716069.1 Pseudomonas aeruginosa strain DR1 genomic scaffold scafold78, whole genome shotgun sequence

⇒Summary: seq-len = 47809 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28282-39367 bp Zoom in on locus 1 x19 x2 x6 CRISPR array Location: 28282-29410 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 28282-29410 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 29515-29604 bp Num of repeats: 2 Spacers: s19-s19 CRISPR array Location: 29515-29604 bp Num of repeats: 2 Spacers: s19-s19 Gene: pfam09707:cas2 Type: universal Location: 29669-29968 bp Gene: cd09719:cas1 Type: universal Location: 30079-30855 bp Gene: pfam08798:cas6e Type: other Location: 30882-31421 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 31468-32130 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 32132-33274 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 33284-33814 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 33811-35223 bp Gene: unk Type: unknown Location: 35223-35465 bp Gene: cd09639:cas3 Type: Type-I Location: 35479-37311 bp CRISPR array Location: 39032-39367 bp Num of repeats: 6 Spacers: s20-s24 CRISPR array Location: 39032-39367 bp Num of repeats: 6 Spacers: s20-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28282-29410 bp]: array | spacers
           [Locus range 29515-29604 bp]: array | spacers
           [Locus range 39032-39367 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)