CRISPRone

CRISPRone report for GCA_000821025.1_F17xCD13A

♦ Seq 1: CCEV01000612.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00612, whole genome shotgun sequence

⇒Summary: seq-len = 883 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 504-729 bp Zoom in on locus 1 x4 CRISPR array Location: 504-729 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 504-729 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 504-729 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CCEV01000382.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00382, whole genome shotgun sequence

⇒Summary: seq-len = 3000 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-285 bp Zoom in on locus 1 x5 CRISPR array Location: 0-285 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-285 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CCEV01000353.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00353, whole genome shotgun sequence

⇒Summary: seq-len = 3391 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2625-3245 bp Zoom in on locus 1 x10 CRISPR array Location: 2625-3245 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2625-3245 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2625-3245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CCEV01000533.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00533, whole genome shotgun sequence

⇒Summary: seq-len = 1414 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 690-1046 bp Zoom in on locus 1 x6 CRISPR array Location: 690-1046 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 690-1046 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 690-1046 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CCEV01000216.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00216, whole genome shotgun sequence

⇒Summary: seq-len = 6241 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5026-6243 bp Zoom in on locus 1 x19 CRISPR array Location: 5026-6243 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 5026-6243 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5026-6243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CCEV01000324.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00324, whole genome shotgun sequence

⇒Summary: seq-len = 3972 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1768-2849 bp Zoom in on locus 1 x17 CRISPR array Location: 1768-2849 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1768-2849 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1768-2849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CCEV01000381.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00381, whole genome shotgun sequence

⇒Summary: seq-len = 3019 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3036 bp Zoom in on locus 1 x19 Gene: pfam01930:cas4 Type: Type-I Location: 3-386 bp Gene: cd09722:cas1 Type: universal Location: 389-1369 bp Gene: cd09725:cas2 Type: universal Location: 1372-1638 bp CRISPR array Location: 1822-3036 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1822-3036 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1822-3036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CCEV01000006.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00006, whole genome shotgun sequence

⇒Summary: seq-len = 27522 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11951-13535 bp Zoom in on locus 1 x13 x3 CRISPR array Location: 11951-12772 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 11951-12772 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 13375-13535 bp Num of repeats: 3 Spacers: s13-s14 CRISPR array Location: 13375-13535 bp Num of repeats: 3 Spacers: s13-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11951-12772 bp]: array | spacers
           [Locus range 13375-13535 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CCEV01000654.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00654, whole genome shotgun sequence

⇒Summary: seq-len = 606 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25-118 bp Zoom in on locus 1 x2 CRISPR array Location: 25-118 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 25-118 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25-118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CCEV01000608.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00608, whole genome shotgun sequence

⇒Summary: seq-len = 908 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81-897 bp Zoom in on locus 1 x13 CRISPR array Location: 81-897 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 81-897 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81-897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: CCEV01000428.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00428, whole genome shotgun sequence

⇒Summary: seq-len = 2389 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1779 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 2-751 bp Gene: cd09650:cas7 Type: Type-I Location: 767-1225 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1522-1779 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: CCEV01000106.1 Peptoclostridium difficile genome assembly F17xCD13A, contig contig00106, whole genome shotgun sequence

⇒Summary: seq-len = 10432 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8-301 bp Zoom in on locus 1 x5 CRISPR array Location: 8-301 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8-301 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8-301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)