CRISPRone

CRISPRone report for GCA_000825745.1_PAE221

♦ Seq 1: CDFS01000057.1 Pseudomonas aeruginosa genome assembly PAE221, contig paqs000010, whole genome shotgun sequence

⇒Summary: seq-len = 207796 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207264-207651 bp Zoom in on locus 1 x7 CRISPR array Location: 207264-207651 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 207264-207651 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207264-207651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CDFS01000026.1 Pseudomonas aeruginosa genome assembly PAE221, contig paqs000029, whole genome shotgun sequence

⇒Summary: seq-len = 50182 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38170-50037 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 38170-39755 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38170-39755 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 39939-40502 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40506-41534 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41545-42528 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42515-43816 bp Gene: COG1203:cas3 Type: Type-I Location: 44227-47457 bp Gene: cd09718:cas1 Type: universal Location: 47454-48428 bp CRISPR array Location: 48689-50037 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 48689-50037 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38170-39755 bp]: array | spacers
           [Locus range 48689-50037 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)