CRISPRone

CRISPRone report for GCA_000826625.2_G46R2_Q2

♦ Seq 1: CDND01000001.1 Peptoclostridium difficile genome assembly G46R2_Q2, contig 1, whole genome shotgun sequence

⇒Summary: seq-len = 4189317 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 378838-386713 bp 2 Locus 2: 962266-973448 bp 3 Locus 3: 1209271-1215803 bp 4 Locus 4: 3203782-3204740 bp 5 Locus 5: 3413127-3413814 bp 6 Locus 6: 3489761-3493774 bp 7 Locus 7: 3524498-3524792 bp 8 Locus 8: 3617175-3619686 bp 9 Locus 9: 3756964-3757788 bp 10 Locus 10: 4065565-4065659 bp 11 Locus 11: 4107280-4107905 bp Zoom in on locus 1 Zoom in on locus 2 x25 Zoom in on locus 3 x10 Zoom in on locus 4 x15 Zoom in on locus 5 x11 Zoom in on locus 6 Zoom in on locus 7 x5 Zoom in on locus 8 x6 x5 Zoom in on locus 9 x13 Zoom in on locus 10 x2 Zoom in on locus 11 x10 Gene: cd09641:cas3HD Type: Type-I Location: 378838-381246 bp Gene: cd09693:cas5 Type: Type-I Location: 381273-382079 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 382095-383108 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 383128-384603 bp Gene: pfam01881:cas6 Type: other Location: 384608-385345 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 385604-386713 bp CRISPR array Location: 962266-963883 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 962266-963883 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 963112-963345 bp Gene: unk Type: unknown Location: 963567-963734 bp Gene: cd09725:cas2 Type: universal Location: 964067-964333 bp Gene: cd09722:cas1 Type: universal Location: 964336-965316 bp Gene: pfam01930:cas4 Type: Type-I Location: 965319-965837 bp Gene: COG1203:cas3 Type: Type-I Location: 965885-968206 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 968217-968918 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 968920-969834 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 969836-971713 bp Gene: pfam01881:cas6 Type: other Location: 971719-972513 bp Gene: pfam13280:WYL Type: other Location: 972534-973448 bp CRISPR array Location: 1209271-1209893 bp Num of repeats: 10 Spacers: s25-s33 CRISPR array Location: 1209271-1209893 bp Num of repeats: 10 Spacers: s25-s33 Gene: COG1203:cas3 Type: Type-I Location: 1210146-1212131 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1212142-1213212 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 1213233-1214399 bp Gene: pfam01881:cas6 Type: other Location: 1214401-1215165 bp Gene: cd09693:cas5 Type: Type-I Location: 1215156-1215803 bp CRISPR array Location: 3203782-3204740 bp Num of repeats: 15 Spacers: s34-s47 CRISPR array Location: 3203782-3204740 bp Num of repeats: 15 Spacers: s34-s47 CRISPR array Location: 3413127-3413814 bp Num of repeats: 11 Spacers: s48-s57 CRISPR array Location: 3413127-3413814 bp Num of repeats: 11 Spacers: s48-s57 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 3489761-3490360 bp Gene: unk Type: unknown Location: 3490528-3490995 bp Gene: COG2378:WYL Type: other Location: 3491100-3492017 bp Gene: cas14:cas14 Type: Type-V Location: 3492656-3493774 bp CRISPR array Location: 3524498-3524792 bp Num of repeats: 5 Spacers: s58-s61 CRISPR array Location: 3524498-3524792 bp Num of repeats: 5 Spacers: s58-s61 CRISPR array Location: 3617175-3617532 bp Num of repeats: 6 Spacers: s62-s66 CRISPR array Location: 3617175-3617532 bp Num of repeats: 6 Spacers: s62-s66 CRISPR array Location: 3619396-3619686 bp Num of repeats: 5 Spacers: s67-s70 CRISPR array Location: 3619396-3619686 bp Num of repeats: 5 Spacers: s67-s70 CRISPR array Location: 3756964-3757788 bp Num of repeats: 13 Spacers: s71-s82 CRISPR array Location: 3756964-3757788 bp Num of repeats: 13 Spacers: s71-s82 CRISPR array Location: 4065565-4065659 bp Num of repeats: 2 Spacers: s83-s83 CRISPR array Location: 4065565-4065659 bp Num of repeats: 2 Spacers: s83-s83 CRISPR array Location: 4107280-4107905 bp Num of repeats: 10 Spacers: s84-s92 CRISPR array Location: 4107280-4107905 bp Num of repeats: 10 Spacers: s84-s92 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 962266-963883 bp]: array | spacers
           [Locus range 1209271-1209893 bp]: array | spacers
           [Locus range 3203782-3204740 bp]: array | spacers
           [Locus range 3413127-3413814 bp]: array | spacers
           [Locus range 3524498-3524792 bp]: array | spacers
           [Locus range 3617175-3617532 bp]: array | spacers
           [Locus range 3619396-3619686 bp]: array | spacers
           [Locus range 3756964-3757788 bp]: array | spacers
           [Locus range 4065565-4065659 bp]: array | spacers
           [Locus range 4107280-4107905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)