CRISPRone

CRISPRone report for GCA_000828235.1_ASM82823v1

♦ Seq 1: JXBP01000002.1 Clostridioides difficile strain LIBA-5701 .11940_2_22.2, whole genome shotgun sequence

⇒Summary: seq-len = 370046 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 322955-323049 bp Zoom in on locus 1 x2 CRISPR array Location: 322955-323049 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 322955-323049 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 322955-323049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JXBP01000005.1 Clostridioides difficile strain LIBA-5701 .11940_2_22.5, whole genome shotgun sequence

⇒Summary: seq-len = 256433 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 169423-170307 bp Zoom in on locus 1 x14 CRISPR array Location: 169423-170307 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 169423-170307 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 169423-170307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JXBP01000007.1 Clostridioides difficile strain LIBA-5701 .11940_2_22.7, whole genome shotgun sequence

⇒Summary: seq-len = 214445 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 122714-123473 bp Zoom in on locus 1 x12 CRISPR array Location: 122714-123473 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 122714-123473 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 122714-123473 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JXBP01000008.1 Clostridioides difficile strain LIBA-5701 .11940_2_22.8, whole genome shotgun sequence

⇒Summary: seq-len = 209967 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31358-42265 bp Zoom in on locus 1 x21 CRISPR array Location: 31358-32700 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 31358-32700 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 32884-33150 bp Gene: cd09722:cas1 Type: universal Location: 33153-34133 bp Gene: pfam01930:cas4 Type: Type-I Location: 34136-34654 bp Gene: COG1203:cas3 Type: Type-I Location: 34702-37023 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 37034-37735 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37737-38651 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 38653-40530 bp Gene: pfam01881:cas6 Type: other Location: 40536-41330 bp Gene: pfam13280:WYL Type: other Location: 41351-42265 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31358-32700 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JXBP01000019.1 Clostridioides difficile strain LIBA-5701 .11940_2_22.19, whole genome shotgun sequence

⇒Summary: seq-len = 80606 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62268-62823 bp Zoom in on locus 1 x9 CRISPR array Location: 62268-62823 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 62268-62823 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62268-62823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JXBP01000001.1 Clostridioides difficile strain LIBA-5701 .11940_2_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 547820 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257333-258219 bp 2 Locus 2: 420195-428541 bp 3 Locus 3: 501811-502236 bp Zoom in on locus 1 x14 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 257333-258219 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 257333-258219 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09641:cas3HD Type: Type-I Location: 420195-422603 bp Gene: cd09693:cas5 Type: Type-I Location: 422630-423427 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 423443-424459 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 424479-425954 bp Gene: pfam01881:cas6 Type: other Location: 425959-426696 bp Gene: unk Type: unknown Location: 426797-426973 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 427432-428541 bp CRISPR array Location: 501811-502236 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 501811-502236 bp Num of repeats: 7 Spacers: s14-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257333-258219 bp]: array | spacers
           [Locus range 501811-502236 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JXBP01000022.1 Clostridioides difficile strain LIBA-5701 .11940_2_22.22, whole genome shotgun sequence

⇒Summary: seq-len = 60750 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56562-57247 bp Zoom in on locus 1 x11 CRISPR array Location: 56562-57247 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 56562-57247 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56562-57247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JXBP01000003.1 Clostridioides difficile strain LIBA-5701 .11940_2_22.3, whole genome shotgun sequence

⇒Summary: seq-len = 266571 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162231-162391 bp Zoom in on locus 1 x3 CRISPR array Location: 162231-162391 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 162231-162391 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 162231-162391 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)