CRISPRone

CRISPRone report for GCA_000828245.1_ASM82824v1

♦ Seq 1: JXBS01000020.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.20, whole genome shotgun sequence

⇒Summary: seq-len = 68247 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63626-64775 bp Zoom in on locus 1 x18 CRISPR array Location: 63626-64775 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63626-64775 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63626-64775 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JXBS01000025.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.25, whole genome shotgun sequence

⇒Summary: seq-len = 12771 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 247-4805 bp Zoom in on locus 1 x5 x4 x8 CRISPR array Location: 247-539 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 247-539 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2222-2448 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 2222-2448 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 4310-4805 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 4310-4805 bp Num of repeats: 8 Spacers: s8-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 247-539 bp]: array | spacers
           [Locus range 2222-2448 bp]: array | spacers
           [Locus range 4310-4805 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JXBS01000002.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.2, whole genome shotgun sequence

⇒Summary: seq-len = 402162 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110296-110456 bp Zoom in on locus 1 x3 CRISPR array Location: 110296-110456 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110296-110456 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110296-110456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JXBS01000027.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.27, whole genome shotgun sequence

⇒Summary: seq-len = 7848 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 246-5177 bp Zoom in on locus 1 x7 x4 x14 CRISPR array Location: 246-670 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 246-670 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2274-2498 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 2274-2498 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 4291-5177 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 4291-5177 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 246-670 bp]: array | spacers
           [Locus range 2274-2498 bp]: array | spacers
           [Locus range 4291-5177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JXBS01000017.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.17, whole genome shotgun sequence

⇒Summary: seq-len = 96608 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17869-18626 bp Zoom in on locus 1 x12 CRISPR array Location: 17869-18626 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17869-18626 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17869-18626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JXBS01000009.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.9, whole genome shotgun sequence

⇒Summary: seq-len = 216394 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124166-124725 bp Zoom in on locus 1 x9 CRISPR array Location: 124166-124725 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124166-124725 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124166-124725 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JXBS01000003.1 Clostridioides difficile strain LIBA-5784 .11940_2_72.3, whole genome shotgun sequence

⇒Summary: seq-len = 371241 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289618-290235 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289618-290235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: JXBS01000001.1 Clostridioides difficile strain LIBA-5784 NAP4, whole genome shotgun sequence

⇒Summary: seq-len = 530541 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44527-44621 bp 2 Locus 2: 266786-277766 bp Zoom in on locus 1 x2 Zoom in on locus 2 x23 CRISPR array Location: 44527-44621 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44527-44621 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 266786-267673 bp Gene: pfam01881:cas6 Type: other Location: 267751-268488 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268494-270344 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270346-271260 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271262-271963 bp Gene: COG1203:cas3 Type: Type-I Location: 271974-274295 bp Gene: pfam01930:cas4 Type: Type-I Location: 274310-274861 bp Gene: cd09722:cas1 Type: universal Location: 274864-275844 bp Gene: cd09725:cas2 Type: universal Location: 275847-276113 bp CRISPR array Location: 276297-277766 bp Num of repeats: 23 Spacers: s2-s23 CRISPR array Location: 276297-277766 bp Num of repeats: 23 Spacers: s2-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44527-44621 bp]: array | spacers
           [Locus range 276297-277766 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)