CRISPRone

CRISPRone report for GCA_000932055.2_ASM93205v2

♦ Seq 1: CP010905.2 Clostridioides difficile 630, complete genome

⇒Summary: seq-len = 4274782 bp; # of CRISPR array = 13; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1109647-1110378 bp 2 Locus 2: 1419380-1420264 bp 3 Locus 3: 1629819-1630578 bp 4 Locus 4: 1740903-1741459 bp 5 Locus 5: 1920107-1921121 bp 6 Locus 6: 2283234-2283394 bp 7 Locus 7: 2647606-2648492 bp 8 Locus 8: 2810473-2818819 bp 9 Locus 9: 2892089-2892514 bp 10 Locus 10: 3381415-3382145 bp 11 Locus 11: 3440140-3450851 bp 12 Locus 12: 3665453-3665546 bp Zoom in on locus 1 x7 x3 Zoom in on locus 2 x14 Zoom in on locus 3 x12 Zoom in on locus 4 x9 Zoom in on locus 5 x16 Zoom in on locus 6 x3 Zoom in on locus 7 x14 Zoom in on locus 8 Zoom in on locus 9 x7 Zoom in on locus 10 x3 x7 Zoom in on locus 11 x18 Zoom in on locus 12 x2 CRISPR array Location: 1109647-1110073 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1109647-1110073 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1110217-1110378 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 1110217-1110378 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 1419380-1420264 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 1419380-1420264 bp Num of repeats: 14 Spacers: s9-s21 CRISPR array Location: 1629819-1630578 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 1629819-1630578 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 1740903-1741459 bp Num of repeats: 9 Spacers: s33-s40 CRISPR array Location: 1740903-1741459 bp Num of repeats: 9 Spacers: s33-s40 CRISPR array Location: 1920107-1921121 bp Num of repeats: 16 Spacers: s41-s55 CRISPR array Location: 1920107-1921121 bp Num of repeats: 16 Spacers: s41-s55 CRISPR array Location: 2283234-2283394 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 2283234-2283394 bp Num of repeats: 3 Spacers: s56-s57 CRISPR array Location: 2647606-2648492 bp Num of repeats: 14 Spacers: s58-s70 CRISPR array Location: 2647606-2648492 bp Num of repeats: 14 Spacers: s58-s70 Gene: cd09641:cas3HD Type: Type-I Location: 2810473-2812881 bp Gene: cd09693:cas5 Type: Type-I Location: 2812908-2813705 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2813721-2814737 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2814757-2816232 bp Gene: pfam01881:cas6 Type: other Location: 2816237-2816974 bp Gene: unk Type: unknown Location: 2817075-2817251 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2817710-2818819 bp CRISPR array Location: 2892089-2892514 bp Num of repeats: 7 Spacers: s71-s76 CRISPR array Location: 2892089-2892514 bp Num of repeats: 7 Spacers: s71-s76 CRISPR array Location: 3381415-3381575 bp Num of repeats: 3 Spacers: s77-s78 CRISPR array Location: 3381415-3381575 bp Num of repeats: 3 Spacers: s77-s78 CRISPR array Location: 3381720-3382145 bp Num of repeats: 7 Spacers: s79-s84 CRISPR array Location: 3381720-3382145 bp Num of repeats: 7 Spacers: s79-s84 CRISPR array Location: 3440140-3441286 bp Num of repeats: 18 Spacers: s85-s101 CRISPR array Location: 3440140-3441286 bp Num of repeats: 18 Spacers: s85-s101 Gene: cd09725:cas2 Type: universal Location: 3441470-3441736 bp Gene: cd09722:cas1 Type: universal Location: 3441739-3442719 bp Gene: pfam01930:cas4 Type: Type-I Location: 3442722-3443240 bp Gene: COG1203:cas3 Type: Type-I Location: 3443288-3445609 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3445620-3446321 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3446323-3447237 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3447239-3449116 bp Gene: pfam01881:cas6 Type: other Location: 3449122-3449916 bp Gene: pfam13280:WYL Type: other Location: 3449937-3450851 bp CRISPR array Location: 3665453-3665546 bp Num of repeats: 2 Spacers: s102-s102 CRISPR array Location: 3665453-3665546 bp Num of repeats: 2 Spacers: s102-s102 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1109647-1110073 bp]: array | spacers
           [Locus range 1110217-1110378 bp]: array | spacers
           [Locus range 1419380-1420264 bp]: array | spacers
           [Locus range 1629819-1630578 bp]: array | spacers
           [Locus range 1740903-1741459 bp]: array | spacers
           [Locus range 1920107-1921121 bp]: array | spacers
           [Locus range 2283234-2283394 bp]: array | spacers
           [Locus range 2647606-2648492 bp]: array | spacers
           [Locus range 2892089-2892514 bp]: array | spacers
           [Locus range 3381415-3381575 bp]: array | spacers
           [Locus range 3381720-3382145 bp]: array | spacers
           [Locus range 3440140-3441286 bp]: array | spacers
           [Locus range 3665453-3665546 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)