CRISPRone

CRISPRone report for GCA_000935985.1_7032985

♦ Seq 1: LK932505.1 Peptoclostridium difficile genome assembly 7032985, scaffold BN1096_Contig_52

⇒Summary: seq-len = 665205 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205612-206169 bp 2 Locus 2: 280389-288254 bp 3 Locus 3: 454011-454238 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 CRISPR array Location: 205612-206169 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 205612-206169 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 280389-281498 bp Gene: pfam01881:cas6 Type: other Location: 281756-282493 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 282498-283973 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 283993-285006 bp Gene: cd09693:cas5 Type: Type-I Location: 285022-285819 bp Gene: cd09641:cas3HD Type: Type-I Location: 285846-288254 bp CRISPR array Location: 454011-454238 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 454011-454238 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 205612-206169 bp]: array | spacers
           [Locus range 454011-454238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LK932525.1 Peptoclostridium difficile genome assembly 7032985, scaffold BN1096_Contig_70

⇒Summary: seq-len = 432619 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 417493-417586 bp Zoom in on locus 1 x2 CRISPR array Location: 417493-417586 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 417493-417586 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 417493-417586 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LK932499.1 Peptoclostridium difficile genome assembly 7032985, scaffold BN1096_Contig_47

⇒Summary: seq-len = 14987 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5138-7113 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 5138-5693 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5138-5693 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6295-7113 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 6295-7113 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5138-5693 bp]: array | spacers
           [Locus range 6295-7113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LK932517.1 Peptoclostridium difficile genome assembly 7032985, scaffold BN1096_Contig_63

⇒Summary: seq-len = 229158 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139212-139437 bp Zoom in on locus 1 x4 CRISPR array Location: 139212-139437 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 139212-139437 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139212-139437 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LK932512.1 Peptoclostridium difficile genome assembly 7032985, scaffold BN1096_Contig_59

⇒Summary: seq-len = 55320 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44729-45158 bp Zoom in on locus 1 x7 CRISPR array Location: 44729-45158 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 44729-45158 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44729-45158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LK932509.1 Peptoclostridium difficile genome assembly 7032985, scaffold BN1096_Contig_56

⇒Summary: seq-len = 350646 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138302-138729 bp 2 Locus 2: 342263-342685 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 CRISPR array Location: 138302-138729 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 138302-138729 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 342263-342685 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 342263-342685 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138302-138729 bp]: array | spacers
           [Locus range 342263-342685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: LK932515.1 Peptoclostridium difficile genome assembly 7032985, scaffold BN1096_Contig_61

⇒Summary: seq-len = 160739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113244-114984 bp Zoom in on locus 1 x27 CRISPR array Location: 113244-114984 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 113244-114984 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113244-114984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)