CRISPRone

CRISPRone report for GCA_000939295.1_7032994

♦ Seq 1: LK932407.1 Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_68

⇒Summary: seq-len = 251147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 568-1124 bp Zoom in on locus 1 x9 CRISPR array Location: 568-1124 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 568-1124 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 568-1124 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LK932402.1 Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_63

⇒Summary: seq-len = 413183 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 210957-211183 bp 2 Locus 2: 376940-384805 bp Zoom in on locus 1 x4 Zoom in on locus 2 CRISPR array Location: 210957-211183 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 210957-211183 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 376940-379348 bp Gene: cd09693:cas5 Type: Type-I Location: 379375-380172 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 380188-381201 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 381221-382696 bp Gene: pfam01881:cas6 Type: other Location: 382701-383438 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 383696-384805 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 210957-211183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LK932400.1 Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_61

⇒Summary: seq-len = 108235 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60953-62693 bp Zoom in on locus 1 x27 CRISPR array Location: 60953-62693 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 60953-62693 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60953-62693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LK932411.1 Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_71

⇒Summary: seq-len = 432595 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 417481-417574 bp Zoom in on locus 1 x2 CRISPR array Location: 417481-417574 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 417481-417574 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 417481-417574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LK932392.1 Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_54

⇒Summary: seq-len = 350456 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138124-138551 bp 2 Locus 2: 342085-342507 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 CRISPR array Location: 138124-138551 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 138124-138551 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 342085-342507 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 342085-342507 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138124-138551 bp]: array | spacers
           [Locus range 342085-342507 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LK932382.1 Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_45

⇒Summary: seq-len = 14963 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5126-7101 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 5126-5681 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5126-5681 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6283-7101 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 6283-7101 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5126-5681 bp]: array | spacers
           [Locus range 6283-7101 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: LK932403.1 Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_64

⇒Summary: seq-len = 90941 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1106-1331 bp Zoom in on locus 1 x4 CRISPR array Location: 1106-1331 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1106-1331 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1106-1331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: LK932395.1 Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_57

⇒Summary: seq-len = 55296 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44717-45146 bp Zoom in on locus 1 x7 CRISPR array Location: 44717-45146 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 44717-45146 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44717-45146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)