CRISPRone

CRISPRone report for GCA_000940315.1_7032989

♦ Seq 1: LK933537.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_92

⇒Summary: seq-len = 45958 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-494 bp Zoom in on locus 1 x8 CRISPR array Location: 2-494 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2-494 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LK933116.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_44

⇒Summary: seq-len = 183354 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7683-8240 bp 2 Locus 2: 82453-90318 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 7683-8240 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7683-8240 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 82453-83562 bp Gene: pfam01881:cas6 Type: other Location: 83820-84557 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 84562-86037 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 86057-87070 bp Gene: cd09693:cas5 Type: Type-I Location: 87086-87883 bp Gene: cd09641:cas3HD Type: Type-I Location: 87910-90318 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7683-8240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LK933541.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_96

⇒Summary: seq-len = 22276 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6109-8084 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 6109-6664 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6109-6664 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7266-8084 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 7266-8084 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6109-6664 bp]: array | spacers
           [Locus range 7266-8084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LK932758.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_117

⇒Summary: seq-len = 279 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16-240 bp Zoom in on locus 1 x4 CRISPR array Location: 16-240 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 16-240 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16-240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LK933005.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_34

⇒Summary: seq-len = 349113 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154385-154807 bp 2 Locus 2: 271151-271580 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 CRISPR array Location: 154385-154807 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 154385-154807 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 271151-271580 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 271151-271580 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 154385-154807 bp]: array | spacers
           [Locus range 271151-271580 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LK932994.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_33

⇒Summary: seq-len = 423967 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72712-72939 bp 2 Locus 2: 420936-421162 bp Zoom in on locus 1 x4 Zoom in on locus 2 x4 CRISPR array Location: 72712-72939 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 72712-72939 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 420936-421162 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 420936-421162 bp Num of repeats: 4 Spacers: s4-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72712-72939 bp]: array | spacers
           [Locus range 420936-421162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: LK932765.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_123

⇒Summary: seq-len = 27605 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14935-15029 bp Zoom in on locus 1 x2 CRISPR array Location: 14935-15029 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 14935-15029 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14935-15029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: LK933183.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_50

⇒Summary: seq-len = 45153 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40-398 bp Zoom in on locus 1 x6 CRISPR array Location: 40-398 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 40-398 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40-398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: LK932916.1 Peptoclostridium difficile genome assembly 7032989, scaffold BN1095_Contig_26

⇒Summary: seq-len = 61151 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60689-61115 bp Zoom in on locus 1 x7 CRISPR array Location: 60689-61115 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 60689-61115 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60689-61115 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)