CRISPRone

CRISPRone report for GCA_000949855.1_ASM94985v1

♦ Seq 1: JYNK01000007.1 Clostridioides difficile strain ZJCDC-S82 contig7, whole genome shotgun sequence

⇒Summary: seq-len = 598695 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 329520-341388 bp Zoom in on locus 1 x35 Gene: pfam13280:WYL Type: other Location: 329520-330473 bp Gene: pfam01881:cas6 Type: other Location: 330551-331288 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 331294-333171 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 333173-334087 bp Gene: cd09693:cas5 Type: Type-I Location: 334089-334790 bp Gene: COG1203:cas3 Type: Type-I Location: 334801-337122 bp Gene: pfam01930:cas4 Type: Type-I Location: 337137-337688 bp Gene: cd09722:cas1 Type: universal Location: 337691-338671 bp Gene: cd09725:cas2 Type: universal Location: 338674-338940 bp CRISPR array Location: 339124-341388 bp Num of repeats: 35 Spacers: s1-s34 CRISPR array Location: 339124-341388 bp Num of repeats: 35 Spacers: s1-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 339124-341388 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JYNK01000008.1 Clostridioides difficile strain ZJCDC-S82 contig8, whole genome shotgun sequence

⇒Summary: seq-len = 143945 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4910-5750 bp Zoom in on locus 1 x3 x10 CRISPR array Location: 4910-5070 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4910-5070 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5132-5750 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 5132-5750 bp Num of repeats: 10 Spacers: s3-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4910-5070 bp]: array | spacers
           [Locus range 5132-5750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JYNK01000012.1 Clostridioides difficile strain ZJCDC-S82 contig12, whole genome shotgun sequence

⇒Summary: seq-len = 786732 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 233164-233585 bp 2 Locus 2: 306131-317979 bp 3 Locus 3: 367523-378470 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 233164-233585 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 233164-233585 bp Num of repeats: 7 Spacers: s1-s6 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 306131-307240 bp Gene: unk Type: unknown Location: 307674-307850 bp Gene: pfam01881:cas6 Type: other Location: 307951-308688 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 308693-310168 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 310187-311203 bp Gene: cd09693:cas5 Type: Type-I Location: 311219-312016 bp Gene: cd09641:cas3HD Type: Type-I Location: 312043-314451 bp Gene: unk Type: unknown Location: 314892-315839 bp Gene: unk Type: unknown Location: 315858-316220 bp Gene: cas14:cas14 Type: Type-V Location: 316861-317979 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 367523-368008 bp Gene: cd06127:DEDDh Type: Type-I Location: 374857-375885 bp Gene: unk Type: unknown Location: 376257-376763 bp Gene: unk Type: unknown Location: 377176-377805 bp Gene: cd06127:DEDDh Type: Type-I Location: 377964-378470 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 233164-233585 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JYNK01000001.1 Clostridioides difficile strain ZJCDC-S82 contig1, whole genome shotgun sequence

⇒Summary: seq-len = 645201 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66841-67790 bp 2 Locus 2: 237488-238177 bp 3 Locus 3: 345758-346572 bp 4 Locus 4: 570088-570446 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 x13 Zoom in on locus 4 x6 CRISPR array Location: 66841-67790 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 66841-67790 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 237488-238177 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 237488-238177 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 345758-346572 bp Num of repeats: 13 Spacers: s25-s36 CRISPR array Location: 345758-346572 bp Num of repeats: 13 Spacers: s25-s36 CRISPR array Location: 570088-570446 bp Num of repeats: 6 Spacers: s37-s41 CRISPR array Location: 570088-570446 bp Num of repeats: 6 Spacers: s37-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 66841-67790 bp]: array | spacers
           [Locus range 237488-238177 bp]: array | spacers
           [Locus range 345758-346572 bp]: array | spacers
           [Locus range 570088-570446 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JYNK01000010.1 Clostridioides difficile strain ZJCDC-S82 contig10, whole genome shotgun sequence

⇒Summary: seq-len = 90571 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1037-17436 bp Zoom in on locus 1 Gene: pfam00078:RT Type: other Location: 1037-2212 bp Gene: unk Type: unknown Location: 2913-3515 bp Gene: unk Type: unknown Location: 3512-5674 bp Gene: unk Type: unknown Location: 5675-6514 bp Gene: pfam00078:RT Type: other Location: 6732-8558 bp Gene: pfam00078:RT Type: other Location: 15616-17436 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JYNK01000014.1 Clostridioides difficile strain ZJCDC-S82 contig14, whole genome shotgun sequence

⇒Summary: seq-len = 232105 bp; # of CRISPR array = 3; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39257-39679 bp 2 Locus 2: 77940-81244 bp 3 Locus 3: 117597-121328 bp 4 Locus 4: 215989-231038 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x20 Zoom in on locus 3 Zoom in on locus 4 CRISPR array Location: 39257-39679 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 39257-39679 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 77940-78100 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 77940-78100 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 79962-81244 bp Num of repeats: 20 Spacers: s9-s27 CRISPR array Location: 79962-81244 bp Num of repeats: 20 Spacers: s9-s27 Gene: cd09718:cas1 Type: universal Location: 117597-119252 bp Gene: unk Type: unknown Location: 119313-120065 bp Gene: unk Type: unknown Location: 120276-120410 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 121029-121328 bp Gene: pfam00078:RT Type: other Location: 215989-216729 bp Gene: pfam00078:RT Type: other Location: 221314-223140 bp Gene: pfam00078:RT Type: other Location: 229266-231038 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 39257-39679 bp]: array | spacers
           [Locus range 77940-78100 bp]: array | spacers
           [Locus range 79962-81244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)