CRISPRone

CRISPRone report for GCA_000988005.1_ASM98800v1

♦ Seq 1: LBMB01000214.1 Pseudomonas aeruginosa strain Pae_CF67.01b CF67.01b_contig_214, whole genome shotgun sequence

⇒Summary: seq-len = 11811 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-11811 bp Zoom in on locus 1 x26 x23 CRISPR array Location: 1-1527 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 1-1527 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09739:cas6f Type: other Location: 1711-2274 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2278-3306 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3317-4300 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4287-5405 bp Gene: COG1203:cas3 Type: Type-I Location: 6001-9231 bp Gene: cd09718:cas1 Type: universal Location: 9228-10202 bp CRISPR array Location: 10463-11811 bp Num of repeats: 23 Spacers: s26-s47 CRISPR array Location: 10463-11811 bp Num of repeats: 23 Spacers: s26-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-1527 bp]: array | spacers
           [Locus range 10463-11811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LBMB01000305.1 Pseudomonas aeruginosa strain Pae_CF67.01b CF67.01b_contig_306, whole genome shotgun sequence

⇒Summary: seq-len = 4487 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-677 bp Zoom in on locus 1 x12 CRISPR array Location: 0-677 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 0-677 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)