CRISPRone

CRISPRone report for GCA_001007185.1_ASM100718v1

♦ Seq 1: LCSZ01000004.1 Pseudomonas aeruginosa strain Pae_CF67.01p CF67.01p_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 72317 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22316-34183 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 22316-23665 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 22316-23665 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23925-24899 bp Gene: COG1203:cas3 Type: Type-I Location: 24896-28126 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28537-29838 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29825-30808 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30819-31847 bp Gene: cd09739:cas6f Type: other Location: 31851-32414 bp CRISPR array Location: 32599-34183 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 32599-34183 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22316-23665 bp]: array | spacers
           [Locus range 32599-34183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCSZ01000002.1 Pseudomonas aeruginosa strain Pae_CF67.01p CF67.01p_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 179298 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 156032-156661 bp Zoom in on locus 1 x11 CRISPR array Location: 156032-156661 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 156032-156661 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 156032-156661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)