CRISPRone

CRISPRone report for GCA_001007195.1_ASM100719v1

♦ Seq 1: LCSQ01000493.1 Pseudomonas aeruginosa strain Pae_CF67.01g CF67.01g_contig_493, whole genome shotgun sequence

⇒Summary: seq-len = 6865 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-6865 bp Zoom in on locus 1 x23 Gene: cd09735:cas8f Type: Subtype-I-F Location: 1-621 bp Gene: COG1203:cas3 Type: Type-I Location: 1051-3432 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 3383-4285 bp Gene: cd09718:cas1 Type: universal Location: 4282-5256 bp CRISPR array Location: 5517-6865 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 5517-6865 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5517-6865 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCSQ01000463.1 Pseudomonas aeruginosa strain Pae_CF67.01g CF67.01g_contig_463, whole genome shotgun sequence

⇒Summary: seq-len = 13713 bp; # of CRISPR array = 2; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-5988 bp Zoom in on locus 1 x22 x7 CRISPR array Location: 1-1291 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1-1291 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1366-1750 bp Num of repeats: 7 Spacers: s22-s27 CRISPR array Location: 1366-1750 bp Num of repeats: 7 Spacers: s22-s27 Gene: cd09739:cas6f Type: other Location: 1934-2497 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2501-3529 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3540-4523 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4510-5988 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-1291 bp]: array | spacers
           [Locus range 1366-1750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LCSQ01000752.1 Pseudomonas aeruginosa strain Pae_CF67.01g CF67.01g_contig_752, whole genome shotgun sequence

⇒Summary: seq-len = 1085 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 938-1086 bp Zoom in on locus 1 x3 CRISPR array Location: 938-1086 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 938-1086 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 938-1086 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)