CRISPRone

CRISPRone report for GCA_001007205.1_ASM100720v1

♦ Seq 1: LCSM01000204.1 Pseudomonas aeruginosa strain Pae_CF67.01c CF67.01c_contig_204, whole genome shotgun sequence

⇒Summary: seq-len = 19000 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7128-19000 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 7128-8713 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 7128-8713 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 8897-9460 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9464-10492 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 10503-11486 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 11473-12591 bp Gene: COG1203:cas3 Type: Type-I Location: 13190-16420 bp Gene: cd09718:cas1 Type: universal Location: 16417-17391 bp CRISPR array Location: 17652-19000 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 17652-19000 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7128-8713 bp]: array | spacers
           [Locus range 17652-19000 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCSM01000218.1 Pseudomonas aeruginosa strain Pae_CF67.01c CF67.01c_contig_218, whole genome shotgun sequence

⇒Summary: seq-len = 8002 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7374-8002 bp Zoom in on locus 1 x11 CRISPR array Location: 7374-8002 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 7374-8002 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7374-8002 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)