CRISPRone

CRISPRone report for GCA_001007285.1_ASM100728v1

♦ Seq 1: LCSS01000285.1 Pseudomonas aeruginosa strain Pae_CF67.01i CF67.01i_contig_285, whole genome shotgun sequence

⇒Summary: seq-len = 4721 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4037-4726 bp Zoom in on locus 1 x12 CRISPR array Location: 4037-4726 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4037-4726 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4037-4726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCSS01000223.1 Pseudomonas aeruginosa strain Pae_CF67.01i CF67.01i_contig_223, whole genome shotgun sequence

⇒Summary: seq-len = 10440 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10440 bp Zoom in on locus 1 x23 x3 CRISPR array Location: 1-1350 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1-1350 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1610-2584 bp Gene: COG1203:cas3 Type: Type-I Location: 2581-5811 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6222-7532 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7519-8502 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8513-9541 bp Gene: cd09739:cas6f Type: other Location: 9545-10108 bp CRISPR array Location: 10293-10440 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 10293-10440 bp Num of repeats: 3 Spacers: s23-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-1350 bp]: array | spacers
           [Locus range 10293-10440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LCSS01000286.1 Pseudomonas aeruginosa strain Pae_CF67.01i CF67.01i_contig_286, whole genome shotgun sequence

⇒Summary: seq-len = 808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-630 bp Zoom in on locus 1 x11 CRISPR array Location: 1-630 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1-630 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)