CRISPRone

CRISPRone report for GCA_001007315.1_ASM100731v1

♦ Seq 1: LCSX01000077.1 Pseudomonas aeruginosa strain Pae_CF67.01n CF67.01n_contig_77, whole genome shotgun sequence

⇒Summary: seq-len = 39089 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1225 bp Zoom in on locus 1 x21 CRISPR array Location: 1-1225 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1-1225 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-1225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCSX01000020.1 Pseudomonas aeruginosa strain Pae_CF67.01n CF67.01n_contig_20, whole genome shotgun sequence

⇒Summary: seq-len = 255347 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62291-62919 bp Zoom in on locus 1 x11 CRISPR array Location: 62291-62919 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62291-62919 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62291-62919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LCSX01000069.1 Pseudomonas aeruginosa strain Pae_CF67.01n CF67.01n_contig_69, whole genome shotgun sequence

⇒Summary: seq-len = 32692 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209-10307 bp Zoom in on locus 1 x23 Gene: cd09739:cas6f Type: other Location: 209-772 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 776-1804 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1815-2798 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2785-4086 bp Gene: COG1203:cas3 Type: Type-I Location: 4497-7727 bp Gene: cd09718:cas1 Type: universal Location: 7724-8698 bp CRISPR array Location: 8959-10307 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 8959-10307 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8959-10307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)