CRISPRone

CRISPRone report for GCA_001007355.1_ASM100735v1

♦ Seq 1: LCSO01000302.1 Pseudomonas aeruginosa strain Pae_CF67.01e CF67.01e_contig_302, whole genome shotgun sequence

⇒Summary: seq-len = 8982 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280-8774 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 280-1254 bp Gene: COG1203:cas3 Type: Type-I Location: 1251-4481 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5080-6198 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6185-7168 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7179-8207 bp Gene: cd09739:cas6f Type: other Location: 8211-8774 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCSO01000317.1 Pseudomonas aeruginosa strain Pae_CF67.01e CF67.01e_contig_317, whole genome shotgun sequence

⇒Summary: seq-len = 1137 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1138 bp Zoom in on locus 1 x16 x2 CRISPR array Location: 0-919 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-919 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1050-1138 bp Num of repeats: 2 Spacers: s16-s16 CRISPR array Location: 1050-1138 bp Num of repeats: 2 Spacers: s16-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-919 bp]: array | spacers
           [Locus range 1050-1138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)