CRISPRone

CRISPRone report for GCA_001007385.1_ASM100738v1

♦ Seq 1: LCST01000850.1 Pseudomonas aeruginosa strain Pae_CF67.01j CF67.01j_contig_850, whole genome shotgun sequence

⇒Summary: seq-len = 3092 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-3092 bp Zoom in on locus 1 x23 Gene: cd09673:cas3f Type: Subtype-I-F Location: 3-512 bp Gene: cd09718:cas1 Type: universal Location: 509-1483 bp CRISPR array Location: 1744-3092 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1744-3092 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1744-3092 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCST01000097.1 Pseudomonas aeruginosa strain Pae_CF67.01j CF67.01j_contig_97, whole genome shotgun sequence

⇒Summary: seq-len = 13575 bp; # of CRISPR array = 2; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-6520 bp Zoom in on locus 1 x23 x11 CRISPR array Location: 1-1351 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1-1351 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1534-2158 bp Num of repeats: 11 Spacers: s23-s32 CRISPR array Location: 1534-2158 bp Num of repeats: 11 Spacers: s23-s32 Gene: cd09739:cas6f Type: other Location: 2466-3029 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3033-4061 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 4072-5055 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5042-6520 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-1351 bp]: array | spacers
           [Locus range 1534-2158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LCST01000970.1 Pseudomonas aeruginosa strain Pae_CF67.01j CF67.01j_contig_970, whole genome shotgun sequence

⇒Summary: seq-len = 8635 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4380-8632 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 4380-7595 bp Gene: cd09735:cas8f Type: Subtype-I-F Location: 8006-8632 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)