CRISPRone

CRISPRone report for GCA_001007425.1_ASM100742v1

♦ Seq 1: LCTC01000007.1 Pseudomonas aeruginosa strain Pae_CF67.01s CF67.01s_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 255875 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62261-62889 bp Zoom in on locus 1 x11 CRISPR array Location: 62261-62889 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62261-62889 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62261-62889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCTC01000001.1 Pseudomonas aeruginosa strain Pae_CF67.01s CF67.01s_contig_1, whole genome shotgun sequence

⇒Summary: seq-len = 398785 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 334057-345924 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 334057-335406 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 334057-335406 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 335666-336640 bp Gene: COG1203:cas3 Type: Type-I Location: 336637-339867 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 340278-341579 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 341566-342549 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 342560-343588 bp Gene: cd09739:cas6f Type: other Location: 343592-344155 bp CRISPR array Location: 344340-345924 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 344340-345924 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 334057-335406 bp]: array | spacers
           [Locus range 344340-345924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)