CRISPRone

CRISPRone report for GCA_001007465.1_ASM100746v1

♦ Seq 1: LCSP01000238.1 Pseudomonas aeruginosa strain Pae_CF67.01f CF67.01f_contig_238, whole genome shotgun sequence

⇒Summary: seq-len = 569 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-569 bp Zoom in on locus 1 x10 CRISPR array Location: 1-569 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1-569 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-569 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCSP01000051.1 Pseudomonas aeruginosa strain Pae_CF67.01f CF67.01f_contig_51, whole genome shotgun sequence

⇒Summary: seq-len = 746 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-570 bp Zoom in on locus 1 x10 CRISPR array Location: 1-570 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1-570 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-570 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LCSP01000239.1 Pseudomonas aeruginosa strain Pae_CF67.01f CF67.01f_contig_239, whole genome shotgun sequence

⇒Summary: seq-len = 10616 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10616 bp Zoom in on locus 1 x23 x6 CRISPR array Location: 1-1350 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1-1350 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1610-2584 bp Gene: COG1203:cas3 Type: Type-I Location: 2581-5811 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6410-7528 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7515-8498 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8509-9537 bp Gene: cd09739:cas6f Type: other Location: 9541-10104 bp CRISPR array Location: 10289-10616 bp Num of repeats: 6 Spacers: s23-s27 CRISPR array Location: 10289-10616 bp Num of repeats: 6 Spacers: s23-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-1350 bp]: array | spacers
           [Locus range 10289-10616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)