CRISPRone

CRISPRone report for GCA_001007485.1_ASM100748v1

♦ Seq 1: LCSN01000183.1 Pseudomonas aeruginosa strain Pae_CF67.01d CF67.01d_contig_183, whole genome shotgun sequence

⇒Summary: seq-len = 19191 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-11870 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 1-1350 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1-1350 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1610-2584 bp Gene: COG1203:cas3 Type: Type-I Location: 2581-5811 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6407-7525 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7512-8495 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8506-9534 bp Gene: cd09739:cas6f Type: other Location: 9538-10101 bp CRISPR array Location: 10286-11870 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 10286-11870 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-1350 bp]: array | spacers
           [Locus range 10286-11870 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCSN01000348.1 Pseudomonas aeruginosa strain Pae_CF67.01d CF67.01d_contig_348, whole genome shotgun sequence

⇒Summary: seq-len = 15987 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-630 bp Zoom in on locus 1 x11 CRISPR array Location: 1-630 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1-630 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)