CRISPRone

CRISPRone report for GCA_001010525.1_ASM101052v1

♦ Seq 1: LCUS01000207.1 Pseudomonas aeruginosa strain Pae_CF67.02b CF67.02b_contig_207, whole genome shotgun sequence

⇒Summary: seq-len = 583 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-593 bp Zoom in on locus 1 x7 x3 CRISPR array Location: 0-376 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-376 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 446-593 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 446-593 bp Num of repeats: 3 Spacers: s7-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-376 bp]: array | spacers
           [Locus range 446-593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCUS01000178.1 Pseudomonas aeruginosa strain Pae_CF67.02b CF67.02b_contig_178, whole genome shotgun sequence

⇒Summary: seq-len = 10371 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10371 bp Zoom in on locus 1 x2 x23 CRISPR array Location: 1-89 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1-89 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09739:cas6f Type: other Location: 273-836 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 840-1868 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1879-2862 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2849-4150 bp Gene: COG1203:cas3 Type: Type-I Location: 4561-7791 bp Gene: cd09718:cas1 Type: universal Location: 7788-8762 bp CRISPR array Location: 9023-10371 bp Num of repeats: 23 Spacers: s2-s23 CRISPR array Location: 9023-10371 bp Num of repeats: 23 Spacers: s2-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-89 bp]: array | spacers
           [Locus range 9023-10371 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LCUS01000129.1 Pseudomonas aeruginosa strain Pae_CF67.02b CF67.02b_contig_129, whole genome shotgun sequence

⇒Summary: seq-len = 6604 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5999-6604 bp Zoom in on locus 1 x2 x7 CRISPR array Location: 5999-6086 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5999-6086 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6216-6604 bp Num of repeats: 7 Spacers: s2-s7 CRISPR array Location: 6216-6604 bp Num of repeats: 7 Spacers: s2-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5999-6086 bp]: array | spacers
           [Locus range 6216-6604 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)