CRISPRone

CRISPRone report for GCA_001010535.1_ASM101053v1

♦ Seq 1: LCUT01000009.1 Pseudomonas aeruginosa strain Pae_CF67.02c CF67.02c_contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 256178 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 193233-193862 bp Zoom in on locus 1 x11 CRISPR array Location: 193233-193862 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 193233-193862 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 193233-193862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCUT01000004.1 Pseudomonas aeruginosa strain Pae_CF67.02c CF67.02c_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 569586 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52862-64729 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 52862-54447 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 52862-54447 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 54631-55194 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 55198-56226 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 56237-57220 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 57207-58508 bp Gene: COG1203:cas3 Type: Type-I Location: 58919-62149 bp Gene: cd09718:cas1 Type: universal Location: 62146-63120 bp CRISPR array Location: 63381-64729 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 63381-64729 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 52862-54447 bp]: array | spacers
           [Locus range 63381-64729 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)