CRISPRone

CRISPRone report for GCA_001010825.1_ASM101082v1

♦ Seq 1: CP003939.1 Clostridioides difficile BJ08 chromosome, complete genome

⇒Summary: seq-len = 4133893 bp; # of CRISPR array = 7; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1275396-1275491 bp 2 Locus 2: 1488193-1488354 bp 3 Locus 3: 1597613-1598170 bp 4 Locus 4: 1689019-1692074 bp 5 Locus 5: 1833313-1833733 bp 6 Locus 6: 2607006-2617964 bp 7 Locus 7: 2669174-2678897 bp 8 Locus 8: 2758684-2758909 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x9 Zoom in on locus 4 x4 x3 Zoom in on locus 5 x7 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x4 CRISPR array Location: 1275396-1275491 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1275396-1275491 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1488193-1488354 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1488193-1488354 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1597613-1598170 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 1597613-1598170 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 1689019-1689246 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 1689019-1689246 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 1691913-1692074 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 1691913-1692074 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 1833313-1833733 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 1833313-1833733 bp Num of repeats: 7 Spacers: s17-s22 Gene: cd06127:DEDDh Type: Type-I Location: 2607006-2607512 bp Gene: unk Type: unknown Location: 2607671-2608339 bp Gene: unk Type: unknown Location: 2608752-2609258 bp Gene: cd06127:DEDDh Type: Type-I Location: 2609630-2610667 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2617479-2617964 bp Gene: cd09641:cas3HD Type: Type-I Location: 2669174-2671582 bp Gene: cd09693:cas5 Type: Type-I Location: 2671609-2672406 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2672422-2673435 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2673455-2674921 bp Gene: pfam01881:cas6 Type: other Location: 2674926-2675663 bp Gene: unk Type: unknown Location: 2675977-2676435 bp Gene: cas14:cas14 Type: Type-V Location: 2676463-2677635 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2677788-2678897 bp CRISPR array Location: 2758684-2758909 bp Num of repeats: 4 Spacers: s23-s25 CRISPR array Location: 2758684-2758909 bp Num of repeats: 4 Spacers: s23-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1275396-1275491 bp]: array | spacers
           [Locus range 1488193-1488354 bp]: array | spacers
           [Locus range 1597613-1598170 bp]: array | spacers
           [Locus range 1689019-1689246 bp]: array | spacers
           [Locus range 1691913-1692074 bp]: array | spacers
           [Locus range 1833313-1833733 bp]: array | spacers
           [Locus range 2758684-2758909 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)