CRISPRone

CRISPRone report for GCA_001013395.1_ASM101339v1

♦ Seq 1: LCWH01000014.1 Pseudomonas aeruginosa strain UM-01, whole genome shotgun sequence

⇒Summary: seq-len = 47825 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37638-47540 bp Zoom in on locus 1 x12 x11 CRISPR array Location: 37638-38325 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 37638-38325 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 38508-39071 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39075-40103 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40114-41097 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41084-42388 bp Gene: COG1203:cas3 Type: Type-I Location: 42446-45676 bp Gene: cd09718:cas1 Type: universal Location: 45673-46647 bp CRISPR array Location: 46912-47540 bp Num of repeats: 11 Spacers: s12-s21 CRISPR array Location: 46912-47540 bp Num of repeats: 11 Spacers: s12-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37638-38325 bp]: array | spacers
           [Locus range 46912-47540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LCWH01000033.1 Pseudomonas aeruginosa strain UM-01, whole genome shotgun sequence

⇒Summary: seq-len = 2230 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 286-1214 bp Zoom in on locus 1 x16 CRISPR array Location: 286-1214 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 286-1214 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 286-1214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)