CRISPRone

CRISPRone report for GCA_001023625.1_ASM102362v1

♦ Seq 1: LDKG01000015.1 Pseudomonas aeruginosa strain Pae_CF67.02d CF67.02d_contig_15, whole genome shotgun sequence

⇒Summary: seq-len = 317193 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192409-204517 bp Zoom in on locus 1 x31 x23 CRISPR array Location: 192409-194235 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 192409-194235 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09739:cas6f Type: other Location: 194419-194982 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 194986-196014 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 196025-197008 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 196995-198296 bp Gene: COG1203:cas3 Type: Type-I Location: 198707-201937 bp Gene: cd09718:cas1 Type: universal Location: 201934-202908 bp CRISPR array Location: 203169-204517 bp Num of repeats: 23 Spacers: s31-s52 CRISPR array Location: 203169-204517 bp Num of repeats: 23 Spacers: s31-s52 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 192409-194235 bp]: array | spacers
           [Locus range 203169-204517 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDKG01000013.1 Pseudomonas aeruginosa strain Pae_CF67.02d CF67.02d_contig_13, whole genome shotgun sequence

⇒Summary: seq-len = 52948 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52861-52949 bp Zoom in on locus 1 x2 CRISPR array Location: 52861-52949 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 52861-52949 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 52861-52949 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDKG01000043.1 Pseudomonas aeruginosa strain Pae_CF67.02d CF67.02d_contig_43, whole genome shotgun sequence

⇒Summary: seq-len = 62307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62220-62307 bp Zoom in on locus 1 x2 CRISPR array Location: 62220-62307 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 62220-62307 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62220-62307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)