CRISPRone

CRISPRone report for GCA_001023635.1_ASM102363v1

♦ Seq 1: LDKJ01000011.1 Pseudomonas aeruginosa strain Pae_CF67.02g CF67.02g_contig_11, whole genome shotgun sequence

⇒Summary: seq-len = 845492 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 337214-349322 bp Zoom in on locus 1 x31 x23 CRISPR array Location: 337214-339040 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 337214-339040 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09739:cas6f Type: other Location: 339224-339787 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 339791-340819 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 340830-341813 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 341800-343101 bp Gene: COG1203:cas3 Type: Type-I Location: 343512-346742 bp Gene: cd09718:cas1 Type: universal Location: 346739-347713 bp CRISPR array Location: 347974-349322 bp Num of repeats: 23 Spacers: s31-s52 CRISPR array Location: 347974-349322 bp Num of repeats: 23 Spacers: s31-s52 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 337214-339040 bp]: array | spacers
           [Locus range 347974-349322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDKJ01000008.1 Pseudomonas aeruginosa strain Pae_CF67.02g CF67.02g_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 62346 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62259-62346 bp Zoom in on locus 1 x2 CRISPR array Location: 62259-62346 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 62259-62346 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62259-62346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)