CRISPRone

CRISPRone report for GCA_001023675.1_ASM102367v1

♦ Seq 1: LDKN01000003.1 Pseudomonas aeruginosa strain Pae_CF67.02k CF67.02k_contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 374111 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268884-269513 bp Zoom in on locus 1 x11 CRISPR array Location: 268884-269513 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 268884-269513 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 268884-269513 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDKN01000034.1 Pseudomonas aeruginosa strain Pae_CF67.02k CF67.02k_contig_34, whole genome shotgun sequence

⇒Summary: seq-len = 71988 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21987-33854 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 21987-23336 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21987-23336 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23596-24570 bp Gene: COG1203:cas3 Type: Type-I Location: 24567-27797 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28208-29509 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29496-30479 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30490-31518 bp Gene: cd09739:cas6f Type: other Location: 31522-32085 bp CRISPR array Location: 32270-33854 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 32270-33854 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21987-23336 bp]: array | spacers
           [Locus range 32270-33854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDKN01000104.1 Pseudomonas aeruginosa strain Pae_CF67.02k CF67.02k_contig_104, whole genome shotgun sequence

⇒Summary: seq-len = 1197 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 982-1194 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 982-1194 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)