CRISPRone

CRISPRone report for GCA_001023755.1_ASM102375v1

♦ Seq 1: LDKX01000013.1 Pseudomonas aeruginosa strain Pae_CF67.03a CF67.03a_contig_13, whole genome shotgun sequence

⇒Summary: seq-len = 369913 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21987-32718 bp Zoom in on locus 1 x23 x8 CRISPR array Location: 21987-23336 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21987-23336 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23596-24570 bp Gene: COG1203:cas3 Type: Type-I Location: 24567-27797 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28208-29509 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29496-30479 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30490-31518 bp Gene: cd09739:cas6f Type: other Location: 31522-32085 bp CRISPR array Location: 32270-32718 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 32270-32718 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21987-23336 bp]: array | spacers
           [Locus range 32270-32718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDKX01000097.1 Pseudomonas aeruginosa strain Pae_CF67.03a CF67.03a_contig_97, whole genome shotgun sequence

⇒Summary: seq-len = 204 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-204 bp Zoom in on locus 1 x4 CRISPR array Location: 1-204 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-204 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDKX01000049.1 Pseudomonas aeruginosa strain Pae_CF67.03a CF67.03a_contig_49, whole genome shotgun sequence

⇒Summary: seq-len = 105108 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104600-105108 bp Zoom in on locus 1 x9 CRISPR array Location: 104600-105108 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 104600-105108 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104600-105108 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)