CRISPRone

CRISPRone report for GCA_001023775.1_ASM102377v1

♦ Seq 1: LDLG01000051.1 Pseudomonas aeruginosa strain Pae_CF67.03j CF67.03j_contig_51, whole genome shotgun sequence

⇒Summary: seq-len = 50245 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38134-50001 bp Zoom in on locus 1 x27 x23 CRISPR array Location: 38134-39719 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 38134-39719 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 39903-40466 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40470-41498 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41509-42492 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42479-43780 bp Gene: COG1203:cas3 Type: Type-I Location: 44191-47421 bp Gene: cd09718:cas1 Type: universal Location: 47418-48392 bp CRISPR array Location: 48653-50001 bp Num of repeats: 23 Spacers: s27-s48 CRISPR array Location: 48653-50001 bp Num of repeats: 23 Spacers: s27-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38134-39719 bp]: array | spacers
           [Locus range 48653-50001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLG01000008.1 Pseudomonas aeruginosa strain Pae_CF67.03j CF67.03j_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 111892 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242-871 bp Zoom in on locus 1 x11 CRISPR array Location: 242-871 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 242-871 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 242-871 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)