CRISPRone

CRISPRone report for GCA_001023815.1_ASM102381v1

♦ Seq 1: LDLK01000050.1 Pseudomonas aeruginosa strain Pae_CF67.03n CF67.03n_contig_50, whole genome shotgun sequence

⇒Summary: seq-len = 137781 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25757-26506 bp Zoom in on locus 1 x13 CRISPR array Location: 25757-26506 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 25757-26506 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25757-26506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLK01000021.1 Pseudomonas aeruginosa strain Pae_CF67.03n CF67.03n_contig_21, whole genome shotgun sequence

⇒Summary: seq-len = 457958 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 457401-457970 bp Zoom in on locus 1 x10 CRISPR array Location: 457401-457970 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 457401-457970 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 457401-457970 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDLK01000008.1 Pseudomonas aeruginosa strain Pae_CF67.03n CF67.03n_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 32477 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10907 bp Zoom in on locus 1 x11 x23 CRISPR array Location: 1-625 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1-625 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09739:cas6f Type: other Location: 809-1372 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1376-2404 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2415-3398 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3385-4686 bp Gene: COG1203:cas3 Type: Type-I Location: 5097-8327 bp Gene: cd09718:cas1 Type: universal Location: 8324-9298 bp CRISPR array Location: 9559-10907 bp Num of repeats: 23 Spacers: s11-s32 CRISPR array Location: 9559-10907 bp Num of repeats: 23 Spacers: s11-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-625 bp]: array | spacers
           [Locus range 9559-10907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)