CRISPRone

CRISPRone report for GCA_001023875.1_ASM102387v1

♦ Seq 1: LDLV01000102.1 Pseudomonas aeruginosa strain Pae_CF67.04g CF67.04g_contig_102, whole genome shotgun sequence

⇒Summary: seq-len = 204 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-205 bp Zoom in on locus 1 x4 CRISPR array Location: 1-205 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-205 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-205 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLV01000046.1 Pseudomonas aeruginosa strain Pae_CF67.04g CF67.04g_contig_46, whole genome shotgun sequence

⇒Summary: seq-len = 12154 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 713-11444 bp Zoom in on locus 1 x23 x8 CRISPR array Location: 713-2062 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 713-2062 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 2322-3296 bp Gene: COG1203:cas3 Type: Type-I Location: 3293-6523 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6934-8235 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8222-9205 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9216-10244 bp Gene: cd09739:cas6f Type: other Location: 10248-10811 bp CRISPR array Location: 10996-11444 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 10996-11444 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 713-2062 bp]: array | spacers
           [Locus range 10996-11444 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDLV01000030.1 Pseudomonas aeruginosa strain Pae_CF67.04g CF67.04g_contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 104819 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104612-104819 bp Zoom in on locus 1 x4 CRISPR array Location: 104612-104819 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 104612-104819 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104612-104819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LDLV01000067.1 Pseudomonas aeruginosa strain Pae_CF67.04g CF67.04g_contig_67, whole genome shotgun sequence

⇒Summary: seq-len = 377 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-389 bp Zoom in on locus 1 x7 CRISPR array Location: 1-389 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1-389 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-389 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)