CRISPRone

CRISPRone report for GCA_001023915.1_ASM102391v1

♦ Seq 1: LDME01000151.1 Pseudomonas aeruginosa strain Pae_CF67.04p CF67.04p_contig_151, whole genome shotgun sequence

⇒Summary: seq-len = 1197 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-216 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 1-216 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDME01000029.1 Pseudomonas aeruginosa strain Pae_CF67.04p CF67.04p_contig_29, whole genome shotgun sequence

⇒Summary: seq-len = 71306 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21305-33172 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 21305-22654 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21305-22654 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 22914-23888 bp Gene: COG1203:cas3 Type: Type-I Location: 23885-27115 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27526-28827 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28814-29797 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29808-30836 bp Gene: cd09739:cas6f Type: other Location: 30840-31403 bp CRISPR array Location: 31588-33172 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 31588-33172 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21305-22654 bp]: array | spacers
           [Locus range 31588-33172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDME01000002.1 Pseudomonas aeruginosa strain Pae_CF67.04p CF67.04p_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 428659 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82116-82744 bp Zoom in on locus 1 x11 CRISPR array Location: 82116-82744 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 82116-82744 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 82116-82744 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)