CRISPRone

CRISPRone report for GCA_001023955.1_ASM102395v1

♦ Seq 1: LDKQ01000071.1 Pseudomonas aeruginosa strain Pae_CF67.02n CF67.02n_contig_71, whole genome shotgun sequence

⇒Summary: seq-len = 63159 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242-871 bp Zoom in on locus 1 x11 CRISPR array Location: 242-871 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 242-871 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 242-871 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDKQ01000021.1 Pseudomonas aeruginosa strain Pae_CF67.02n CF67.02n_contig_21, whole genome shotgun sequence

⇒Summary: seq-len = 50241 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 241-12108 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 241-1590 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 241-1590 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 1850-2824 bp Gene: COG1203:cas3 Type: Type-I Location: 2821-6051 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6462-7763 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7750-8733 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8744-9772 bp Gene: cd09739:cas6f Type: other Location: 9776-10339 bp CRISPR array Location: 10524-12108 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 10524-12108 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241-1590 bp]: array | spacers
           [Locus range 10524-12108 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)