CRISPRone

CRISPRone report for GCA_001024075.1_ASM102407v1

♦ Seq 1: LDLC01000037.1 Pseudomonas aeruginosa strain Pae_CF67.03f CF67.03f_contig_37, whole genome shotgun sequence

⇒Summary: seq-len = 32813 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21305-32823 bp Zoom in on locus 1 x23 x7 x13 CRISPR array Location: 21305-22654 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21305-22654 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 22914-23888 bp Gene: COG1203:cas3 Type: Type-I Location: 23885-27115 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27526-28827 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28814-29797 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29808-30836 bp Gene: cd09739:cas6f Type: other Location: 30840-31403 bp CRISPR array Location: 31588-31975 bp Num of repeats: 7 Spacers: s23-s28 CRISPR array Location: 31588-31975 bp Num of repeats: 7 Spacers: s23-s28 CRISPR array Location: 32075-32823 bp Num of repeats: 13 Spacers: s29-s40 CRISPR array Location: 32075-32823 bp Num of repeats: 13 Spacers: s29-s40 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21305-22654 bp]: array | spacers
           [Locus range 31588-31975 bp]: array | spacers
           [Locus range 32075-32823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLC01000005.1 Pseudomonas aeruginosa strain Pae_CF67.03f CF67.03f_contig_5, whole genome shotgun sequence

⇒Summary: seq-len = 487462 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 382340-382849 bp Zoom in on locus 1 x9 CRISPR array Location: 382340-382849 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 382340-382849 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 382340-382849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)