CRISPRone

CRISPRone report for GCA_001024195.1_ASM102419v1

♦ Seq 1: LDLN01000008.1 Pseudomonas aeruginosa strain Pae_CF67.03q CF67.03q_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 50194 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38135-49882 bp Zoom in on locus 1 x25 x23 CRISPR array Location: 38135-39600 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 38135-39600 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09739:cas6f Type: other Location: 39784-40347 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40351-41379 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41390-42373 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42360-43661 bp Gene: COG1203:cas3 Type: Type-I Location: 44072-47302 bp Gene: cd09718:cas1 Type: universal Location: 47299-48273 bp CRISPR array Location: 48534-49882 bp Num of repeats: 23 Spacers: s25-s46 CRISPR array Location: 48534-49882 bp Num of repeats: 23 Spacers: s25-s46 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38135-39600 bp]: array | spacers
           [Locus range 48534-49882 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLN01000030.1 Pseudomonas aeruginosa strain Pae_CF67.03q CF67.03q_contig_30, whole genome shotgun sequence

⇒Summary: seq-len = 63709 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 811-1440 bp Zoom in on locus 1 x11 CRISPR array Location: 811-1440 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 811-1440 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 811-1440 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)