CRISPRone

CRISPRone report for GCA_001024205.1_ASM102420v1

♦ Seq 1: LDLO01000003.1 Pseudomonas aeruginosa strain Pae_CF67.03r CF67.03r_contig_3, whole genome shotgun sequence

⇒Summary: seq-len = 445339 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62372-63000 bp Zoom in on locus 1 x11 CRISPR array Location: 62372-63000 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62372-63000 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62372-63000 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLO01000002.1 Pseudomonas aeruginosa strain Pae_CF67.03r CF67.03r_contig_2, whole genome shotgun sequence

⇒Summary: seq-len = 71317 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21376-33183 bp Zoom in on locus 1 x23 x26 CRISPR array Location: 21376-22725 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21376-22725 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 22985-23959 bp Gene: COG1203:cas3 Type: Type-I Location: 23956-27186 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27597-28898 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28885-29868 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29879-30907 bp Gene: cd09739:cas6f Type: other Location: 30911-31474 bp CRISPR array Location: 31659-33183 bp Num of repeats: 26 Spacers: s23-s47 CRISPR array Location: 31659-33183 bp Num of repeats: 26 Spacers: s23-s47 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21376-22725 bp]: array | spacers
           [Locus range 31659-33183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)