CRISPRone

CRISPRone report for GCA_001024285.1_ASM102428v1

♦ Seq 1: LDMA01000066.1 Pseudomonas aeruginosa strain Pae_CF67.04l CF67.04l_contig_66, whole genome shotgun sequence

⇒Summary: seq-len = 12160 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-11448 bp Zoom in on locus 1 x20 x23 CRISPR array Location: 1-1166 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1-1166 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 1350-1913 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1917-2945 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2956-3939 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3926-5227 bp Gene: COG1203:cas3 Type: Type-I Location: 5638-8868 bp Gene: cd09718:cas1 Type: universal Location: 8865-9839 bp CRISPR array Location: 10100-11448 bp Num of repeats: 23 Spacers: s20-s41 CRISPR array Location: 10100-11448 bp Num of repeats: 23 Spacers: s20-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-1166 bp]: array | spacers
           [Locus range 10100-11448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDMA01000035.1 Pseudomonas aeruginosa strain Pae_CF67.04l CF67.04l_contig_35, whole genome shotgun sequence

⇒Summary: seq-len = 38936 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-268 bp Zoom in on locus 1 x5 CRISPR array Location: 1-268 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1-268 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-268 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDMA01000009.1 Pseudomonas aeruginosa strain Pae_CF67.04l CF67.04l_contig_9, whole genome shotgun sequence

⇒Summary: seq-len = 208055 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207311-207879 bp Zoom in on locus 1 x10 CRISPR array Location: 207311-207879 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 207311-207879 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207311-207879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)