CRISPRone

CRISPRone report for GCA_001024355.1_ASM102435v1

♦ Seq 1: LDMG01000036.1 Pseudomonas aeruginosa strain Pae_CF67.04r CF67.04r_contig_36, whole genome shotgun sequence

⇒Summary: seq-len = 71572 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21571-33438 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 21571-22920 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21571-22920 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23180-24154 bp Gene: COG1203:cas3 Type: Type-I Location: 24151-27381 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27792-29093 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29080-30063 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30074-31102 bp Gene: cd09739:cas6f Type: other Location: 31106-31669 bp CRISPR array Location: 31854-33438 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 31854-33438 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21571-22920 bp]: array | spacers
           [Locus range 31854-33438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDMG01000004.1 Pseudomonas aeruginosa strain Pae_CF67.04r CF67.04r_contig_4, whole genome shotgun sequence

⇒Summary: seq-len = 320393 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62301-62929 bp Zoom in on locus 1 x11 CRISPR array Location: 62301-62929 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 62301-62929 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62301-62929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)