CRISPRone

CRISPRone report for GCA_001024375.1_ASM102437v1

♦ Seq 1: LDKK01000010.1 Pseudomonas aeruginosa strain Pae_CF67.02h CF67.02h_contig_10, whole genome shotgun sequence

⇒Summary: seq-len = 379374 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 316467-317096 bp Zoom in on locus 1 x11 CRISPR array Location: 316467-317096 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 316467-317096 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 316467-317096 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDKK01000008.1 Pseudomonas aeruginosa strain Pae_CF67.02h CF67.02h_contig_8, whole genome shotgun sequence

⇒Summary: seq-len = 398954 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 334226-346093 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 334226-335575 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 334226-335575 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 335835-336809 bp Gene: COG1203:cas3 Type: Type-I Location: 336806-340036 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 340447-341748 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 341735-342718 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 342729-343757 bp Gene: cd09739:cas6f Type: other Location: 343761-344324 bp CRISPR array Location: 344509-346093 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 344509-346093 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 334226-335575 bp]: array | spacers
           [Locus range 344509-346093 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)