CRISPRone

CRISPRone report for GCA_001024435.1_ASM102443v1

♦ Seq 1: LDKY01000025.1 Pseudomonas aeruginosa strain Pae_CF67.03b CF67.03b_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 111710 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111048-111676 bp Zoom in on locus 1 x11 CRISPR array Location: 111048-111676 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 111048-111676 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111048-111676 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDKY01000053.1 Pseudomonas aeruginosa strain Pae_CF67.03b CF67.03b_contig_53, whole genome shotgun sequence

⇒Summary: seq-len = 10923 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 322-10934 bp Zoom in on locus 1 x21 x6 CRISPR array Location: 322-1551 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 322-1551 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09718:cas1 Type: universal Location: 1811-2785 bp Gene: COG1203:cas3 Type: Type-I Location: 2782-6012 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6423-7724 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7711-8694 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8705-9733 bp Gene: cd09739:cas6f Type: other Location: 9737-10300 bp CRISPR array Location: 10611-10934 bp Num of repeats: 6 Spacers: s21-s25 CRISPR array Location: 10611-10934 bp Num of repeats: 6 Spacers: s21-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 322-1551 bp]: array | spacers
           [Locus range 10611-10934 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDKY01000060.1 Pseudomonas aeruginosa strain Pae_CF67.03b CF67.03b_contig_60, whole genome shotgun sequence

⇒Summary: seq-len = 61072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60396-61084 bp Zoom in on locus 1 x12 CRISPR array Location: 60396-61084 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 60396-61084 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60396-61084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)