CRISPRone

CRISPRone report for GCA_001024535.1_ASM102453v1

♦ Seq 1: LDLP01000046.1 Pseudomonas aeruginosa strain Pae_CF67.04a CF67.04a_contig_46, whole genome shotgun sequence

⇒Summary: seq-len = 82657 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 82582-82669 bp Zoom in on locus 1 x2 CRISPR array Location: 82582-82669 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 82582-82669 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 82582-82669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLP01000054.1 Pseudomonas aeruginosa strain Pae_CF67.04a CF67.04a_contig_54, whole genome shotgun sequence

⇒Summary: seq-len = 11964 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 888-11974 bp Zoom in on locus 1 x23 x14 CRISPR array Location: 888-2237 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 888-2237 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 2497-3471 bp Gene: COG1203:cas3 Type: Type-I Location: 3468-6698 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7109-8410 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8397-9380 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9391-10419 bp Gene: cd09739:cas6f Type: other Location: 10423-10986 bp CRISPR array Location: 11171-11974 bp Num of repeats: 14 Spacers: s23-s35 CRISPR array Location: 11171-11974 bp Num of repeats: 14 Spacers: s23-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 888-2237 bp]: array | spacers
           [Locus range 11171-11974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDLP01000068.1 Pseudomonas aeruginosa strain Pae_CF67.04a CF67.04a_contig_68, whole genome shotgun sequence

⇒Summary: seq-len = 38642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38135-38643 bp Zoom in on locus 1 x9 CRISPR array Location: 38135-38643 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 38135-38643 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38135-38643 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LDLP01000079.1 Pseudomonas aeruginosa strain Pae_CF67.04a CF67.04a_contig_79, whole genome shotgun sequence

⇒Summary: seq-len = 200 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-201 bp Zoom in on locus 1 x4 CRISPR array Location: 0-201 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 0-201 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-201 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)