CRISPRone

CRISPRone report for GCA_001024565.1_ASM102456v1

♦ Seq 1: LDLT01000099.1 Pseudomonas aeruginosa strain Pae_CF67.04e CF67.04e_contig_99, whole genome shotgun sequence

⇒Summary: seq-len = 859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-859 bp Zoom in on locus 1 x15 CRISPR array Location: 0-859 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 0-859 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLT01000076.1 Pseudomonas aeruginosa strain Pae_CF67.04e CF67.04e_contig_76, whole genome shotgun sequence

⇒Summary: seq-len = 16019 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-10311 bp Zoom in on locus 1 x4 x20 CRISPR array Location: 1-209 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-209 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09739:cas6f Type: other Location: 393-956 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 960-1988 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1999-2982 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2969-4270 bp Gene: COG1203:cas3 Type: Type-I Location: 4681-7911 bp Gene: cd09718:cas1 Type: universal Location: 7908-8882 bp CRISPR array Location: 9143-10311 bp Num of repeats: 20 Spacers: s4-s22 CRISPR array Location: 9143-10311 bp Num of repeats: 20 Spacers: s4-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-209 bp]: array | spacers
           [Locus range 9143-10311 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDLT01000007.1 Pseudomonas aeruginosa strain Pae_CF67.04e CF67.04e_contig_7, whole genome shotgun sequence

⇒Summary: seq-len = 211203 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3726-4054 bp Zoom in on locus 1 x6 CRISPR array Location: 3726-4054 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3726-4054 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3726-4054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)