CRISPRone

CRISPRone report for GCA_001024615.1_ASM102461v1

♦ Seq 1: LDLX01000053.1 Pseudomonas aeruginosa strain Pae_CF67.04i CF67.04i_contig_53, whole genome shotgun sequence

⇒Summary: seq-len = 10309 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3931-10308 bp Zoom in on locus 1 x27 CRISPR array Location: 3931-5516 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 3931-5516 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09739:cas6f Type: other Location: 5700-6263 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6267-7295 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7306-8289 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 8276-9577 bp Gene: cd09673:cas3f Type: Subtype-I-F Location: 9988-10308 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3931-5516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDLX01000056.1 Pseudomonas aeruginosa strain Pae_CF67.04i CF67.04i_contig_56, whole genome shotgun sequence

⇒Summary: seq-len = 47561 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42053-47560 bp Zoom in on locus 1 x23 CRISPR array Location: 42053-43402 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 42053-43402 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 43662-44636 bp Gene: COG1203:cas3 Type: Type-I Location: 44633-47560 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42053-43402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LDLX01000062.1 Pseudomonas aeruginosa strain Pae_CF67.04i CF67.04i_contig_62, whole genome shotgun sequence

⇒Summary: seq-len = 104689 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-79 bp Zoom in on locus 1 x2 CRISPR array Location: 0-79 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-79 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-79 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)