CRISPRone

CRISPRone report for GCA_001024645.1_ASM102464v1

♦ Seq 1: LDMD01000019.1 Pseudomonas aeruginosa strain Pae_CF67.04o CF67.04o_contig_19, whole genome shotgun sequence

⇒Summary: seq-len = 382785 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-449 bp Zoom in on locus 1 x8 CRISPR array Location: 1-449 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1-449 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDMD01000040.1 Pseudomonas aeruginosa strain Pae_CF67.04o CF67.04o_contig_40, whole genome shotgun sequence

⇒Summary: seq-len = 71568 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38135-49582 bp Zoom in on locus 1 x20 x23 CRISPR array Location: 38135-39300 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 38135-39300 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09739:cas6f Type: other Location: 39484-40047 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40051-41079 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41090-42073 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42060-43361 bp Gene: COG1203:cas3 Type: Type-I Location: 43772-47002 bp Gene: cd09718:cas1 Type: universal Location: 46999-47973 bp CRISPR array Location: 48234-49582 bp Num of repeats: 23 Spacers: s20-s41 CRISPR array Location: 48234-49582 bp Num of repeats: 23 Spacers: s20-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38135-39300 bp]: array | spacers
           [Locus range 48234-49582 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)