CRISPRone

CRISPRone report for GCA_001024695.1_ASM102469v1

♦ Seq 1: LDMI01000085.1 Pseudomonas aeruginosa strain Pae_CF67.04t CF67.04t_contig_85, whole genome shotgun sequence

⇒Summary: seq-len = 71775 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21774-33641 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 21774-23123 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21774-23123 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23383-24357 bp Gene: COG1203:cas3 Type: Type-I Location: 24354-27584 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27995-29296 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29283-30266 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30277-31305 bp Gene: cd09739:cas6f Type: other Location: 31309-31872 bp CRISPR array Location: 32057-33641 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 32057-33641 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21774-23123 bp]: array | spacers
           [Locus range 32057-33641 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LDMI01000025.1 Pseudomonas aeruginosa strain Pae_CF67.04t CF67.04t_contig_25, whole genome shotgun sequence

⇒Summary: seq-len = 62689 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35-664 bp Zoom in on locus 1 x11 CRISPR array Location: 35-664 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 35-664 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35-664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)